The part about mRNA shifting one codon, isn't it the ribosome that shifts one codon?

No. The ribosome is the workbench and the mRNA is being moved through the ribosome shifting downwards every codon.

What about Initiation factors? IF1, IF2 & IF3. Please could you explain their roles? Thanks

IF1, Binds to the 30S subunit to the A site, prevents tRNA binding IF2, Binds initiator tRNA (f-Met) and controls its entry to the ribosome at the P site IF3, Required for the 30S to bind mRNA

what about untranslated regions? such as the 5' and 3' UTR

They don't get translated! The 5' UTR is everything 5' of the start codon. The interesting question is how does the ribosome know which start codon to start with? The short answer to that is that the sequence of the mRNA around a potential start codon influences whether or not it will be used§. These sequences are bound by proteins that help guide the ribosome to assemble at the correct place to start translation. (In fact, codons other than AUG are sometimes used as start codons!) This is covered in a bit more detail in another article: https://www.khanacademy.org/science/biology/gene-expression-central-dogma/translation-polypeptides/a/the-stages-of-translation I also encourage you to look at some of the references for that section, which will help give you more detail on this high complex process that is still being actively studied. The 3' UTR is simpler to identify — it is typically† everything after the first in frame stop codon and before the polyadenylation signal (where the polyA tail gets added. Does that help? ———————————————————————————————————— §Note: The mechanisms are very different in prokaryotic and eukaryotic organisms — they can also vary between different species and even for different genes! †Note: As is often true in biology there are numerous caveats and exceptions. A common example is found in eukaryotic genes — these genes often have introns, some of which are only spliced in some circumstances, so the in frame stop may be in different places for different transcripts from the same gene. This is knowns as alternative splicing.

what is the total atp or gtp utilised?

It costs 4n high-energy bonds to make a peptide chain. n= the number of amino acids in the chain. For example: How many high-energy phosphate bonds are required to make a 50 amino acid polypeptide chain? Solution: 200. -2 phosphate bonds hydrolyzed per amino acid to make the amino-acyl tRNAs (or 100 for the 50 AAs) -2 phosphate bonds required for each elongation step (49 steps in a chain of 50, so 98 for the chain) -1 GTP for initiation to position the first tRNA and mRNA on the ribosome -1 GTP for termination For a total of 200.

During translation, is the tRNA used up or can it be recycled?

Great question! The tRNA is released into the cell and can again be joined with an amino acid. (Details on the joining are in the previous section.)

Don't release factors bind in the A site (not the P site)?

A release factor (RF) refers to a type of translation factor that triggers translation termination. Release factors fall into two classes; Class I release factors that bind the ribosome in response to the presence of a stop codon within the ribosomal A-site. Thus it binds with A site (not P site).

Why do polypeptides always start with methionine? Thanks!

They don't. Polypeptides frequently start with a methionine for reasons that are discussed in this article ... However, the beginnings of many polypeptides are removed (this is a class of post-translational modification), so even if they did start with methionine the mature protein may not.

In eukaryotic mRNA, is the start codon always at the start of the first exon?

Yes, it is. It cannot be considered start codon if it is not AUG at the beginning of first exon. What might confuse is that it does not have to be on the very strict beginning, there might be nucleotides before, but that is 5' untranslated region. The first AUG is usually considered as a start codon, but probably GGC could take place in front of that AUG and be not translated by the ribosome.

Where does used mRNA "go" once it's been translated? Does it travel back to the nucleus or just stay where it was?

There are two things that could happen to it. It could go back to the nucleus to be reused, or, if it is detected to have outlived its usefulness, be destroyed. There are several proteins that "watch" the mRNA to make sure it is still reliable, and if it isn't it is degraded. Otherwise, yes, it gets reused. Anyway, I hope this helped!

Main content

Course: Biology library > Unit 18

Lesson 3: Translation

Stages of translation

Google Classroom

An in-depth look how polypeptides (proteins) are made. Initiation, elongation, and termination.

Introduction

Ever wonder how antibiotics kill bacteria—for instance, when you have a sinus infection? Different antibiotics work in different ways, but some attack a very basic process in bacterial cells: they knock out the ability to make new proteins.

To use a little molecular biology vocab, these antibiotics block translation. In the process of translation, a cell reads information from a molecule called a messenger RNA (mRNA) and uses this information to build a protein. Translation is happening constantly in a normal bacterial cell, just like it is in most of the cells of your body, and it's key to keeping you (and your bacterial "visitors") alive.

When you take certain antibiotics (e.g., erythromycin), the antibiotic molecule will latch onto key translation molecules inside of bacterial cells and basically "stall" them. With no way to make proteins, the bacteria will stop functioning and, eventually, die. That's why infections clear up when they're treated with the antibiotic.

^{1, 2}

Great question! Erythromycin blocks translation only in bacteria, not in humans like you and me. To see why, we need to know a little more about how the antibiotic works.

The erythromycin molecule attaches to a specific site on a key translation molecule, the ribosome. This site is different between humans and bacteria, so the erythromycin can only attach to the bacterial version (and not to the human version).

^{3}

If this weren't the case, erythromycin would be harmful to us as well as to bacteria!

Cells need translation to stay alive, and understanding how it works (so we can shut it down with antibiotics) can save us from bacterial infections. Let's take a closer look at how translation happens, from the first step to the final product.

Translation: The big picture

Translation involves “decoding” a messenger RNA (mRNA) and using its information to build a polypeptide, or chain of amino acids. For most purposes, a polypeptide is basically just a protein (with the technical difference being that some large proteins are made up of several polypeptide chains).

The genetic code

In an mRNA, the instructions for building a polypeptide come in groups of three nucleotides called codons. Here are some key features of codons to keep in mind as we move forward:

There are $61$ ‍ different codons for amino acids
Three “stop” codons mark the polypeptide as finished
One codon, AUG, is a “start” signal to kick off translation (it also specifies the amino acid methionine)

These relationships between mRNA codons and amino acids are known as the genetic code (which you can explore further in the genetic code article).

Codons to amino acids

In translation, the codons of an mRNA are read in order (from the 5' end to the 3' end) by molecules called transfer RNAs, or tRNAs.

Each tRNA has an anticodon, a set of three nucleotides that binds to a matching mRNA codon through base pairing. The other end of the tRNA carries the amino acid that's specified by the codon.

Great questions! Let's start with base pairing.

Base pairs happen when bonds form between the nitrogenous bases in DNA and/or RNA molecules. (As a refresher, bases are the chemical groups that are abbreviated A, T, C, and G in DNA, or A, U, C, and G in RNA). Only certain bases can pair with each other: for instance, in typical cases, A bonds with U in RNA molecules.

An example of a tRNA forming base pairs with an mRNA is shown below. You can see three base pairs, each marked with a line:

Now, what about 5' and 3' ends? The basic idea here is that the two ends of a strand of DNA or RNA are different from each other.

At the 5’ end of the chain, the phosphate group of the first nucleotide in the chain sticks out.
At the other end, called the 3’ end, the hydroxyl of the last nucleotide added to the chain is exposed.

Often, molecular processes can only take place in a certain direction along a DNA or RNA strand. For instance, in translation, the mRNA is always read from the 5' end towards the 3' end.

Curious about why this 5 'and 3' stuff matters? You can learn more about its importance in the article on nucleic acids.

tRNAs bind to mRNAs inside of a protein-and-RNA structure called the ribosome. As tRNAs enter slots in the ribosome and bind to codons, their amino acids are linked to the growing polypeptide chain in a chemical reaction. The end result is a polypeptide whose amino acid sequence mirrors the sequence of codons in the mRNA.

That's the big picture of translation. But what about the nitty gritty of how translation begins, proceeds, and finishes? Let's take a look.

Translation: Beginning, middle, and end

A book or movie has three basic parts: a beginning, middle, and end. Translation has pretty much the same three parts, but they have fancier names: initiation, elongation, and termination.

Initiation ("beginning"): in this stage, the ribosome gets together with the mRNA and the first tRNA so translation can begin.
Elongation ("middle"): in this stage, amino acids are brought to the ribosome by tRNAs and linked together to form a chain.
Termination ("end"): in the last stage, the finished polypeptide is released to go and do its job in the cell.

Let’s take a closer look at how each stage works.

Initiation

In order for translation to start, we need a few key ingredients. These include:

A ribosome (which comes in two pieces, large and small)
An mRNA with instructions for the protein we'll build
An "initiator" tRNA carrying the first amino acid in the protein, which is almost always methionine (Met)

During initiation, these pieces must come together in just the right way. Together, they form the initiation complex, the molecular setup needed to start making a new protein.

No, not exactly! Initiation calls for some helper molecules, as well as an energy source.

^{4, 5}

Initiation depends on specialized protein "helpers" called initiation factors. Their job is to help the ribosome subunits, tRNA, and mRNA find each other in an orderly and predictable way.

Also, there's no such thing as a free lunch: moving those initiation ingredients around requires energy. The energy is provided by the cell in the form of guanosine triphosphate (GTP), a common "energy currency" molecule that's similar to the better-known ATP.

Inside your cells (and the cells of other eukaryotes), translation initiation goes like this: first, the tRNA carrying methionine attaches to the small ribosomal subunit. Together, they bind to the 5' end of the mRNA by recognizing the 5' GTP cap (added during processing in the nucleus). Then, they "walk" along the mRNA in the 3' direction, stopping when they reach the start codon (often, but not always, the first AUG).

^{6}

In bacteria, the situation is a little different. Here, the small ribosomal subunit doesn't start at the 5' end of the mRNA and travel toward the 3' end. Instead, it attaches directly to certain sequences in the mRNA. These Shine-Dalgarno sequences come just before start codons and "point them out" to the ribosome.

Why use Shine-Dalgarno sequences? Bacterial genes are often transcribed in groups (called operons), so one bacterial mRNA can contain the coding sequences for several genes. A Shine-Dalgarno sequence marks the start of each coding sequence, letting the ribosome find the right start codon for each gene.

Elongation

I like to remember what happens in this "middle" stage of translation by its handy name: elongation is when the polypeptide chain gets longer.

But how does the chain actually grow? To find out, let's take a look at the first round of elongation—after the initiation complex has formed, but before any amino acids have been linked to make a chain.

Our first, methionine-carrying tRNA starts out in the middle slot of the ribosome, called the P site. Next to it, a fresh codon is exposed in another slot, called the A site. The A site will be the "landing site" for the next tRNA, one whose anticodon is a perfect (complementary) match for the exposed codon.

Non-matching tRNAs may also enter the A site. Why doesn't this cause wrong amino acids to be added to the chain?

Well, non-matching tRNAs may be able to enter the A site...but in general, they don't get to stay there. In a careful process that never fails to fascinate me, each tRNA is escorted by helper proteins, and only a tRNA that's a perfect match for the codon will be "released" into the A slot by its choosy helpers.

^{7}

A molecule of the energy storage molecule guanosine triphosphate (GTP) is used up to release the tRNA, which is why the diagram shows this step as needing GTP.

Once the matching tRNA has landed in the A site, it's time for the action: that is, the formation of the peptide bond that connects one amino acid to another. This step transfers the methionine from the first tRNA onto the amino acid of the second tRNA in the A site.

Not bad—we now have two amino acids, a (very tiny) polypeptide! The methionine forms the N-terminus of the polypeptide, and the other amino acid is the C-terminus.

Great question! Amino acids have an amino group (

- {NH}_{2}

) at one end and a carboxyl group (

- COOH

) at the other:

A polypeptide is made up of amino acids connected in a chain. Although the amino and carboxyl groups of most amino acids in the chain will be tied up in peptide bonds, the amino acids at the very ends of the chain will each have a free chemical group.

One end of the polypeptide has an exposed amino group. This end is called the N-terminus, for the nitrogen atom of the amino group.
The other end of the polypeptide has an exposed carboxyl group. This end is called the C-terminus, for the carbon atom of the carboxyl group.

The first amino acid in a polypeptide (the methionine carried by the first tRNA) lies at the N-terminus, and new amino acids are progressively added at the C-terminus:

But...odds are we may want a longer polypeptide than two amino acids. How does the chain continue to grow? Once the peptide bond is formed, the mRNA is pulled onward through the ribosome by exactly one codon. This shift allows the first, empty tRNA to drift out via the E ("exit") site. It also exposes a new codon in the A site, so the whole cycle can repeat.

And repeat it does...from a few times up to a mind-boggling

33,

000

times! The protein titin, which is found in your muscles and is the longest known polypeptide, can have up to

33,

000

amino acids

^{8, 9}

Termination

Polypeptides, like all good things, must eventually come to an end. Translation ends in a process called termination. Termination happens when a stop codon in the mRNA (UAA, UAG, or UGA) enters the A site.

Stop codons are recognized by proteins called release factors, which fit neatly into the P site (though they aren't tRNAs). Release factors mess with the enzyme that normally forms peptide bonds: they make it add a water molecule to the last amino acid of the chain. This reaction separates the chain from the tRNA, and the newly made protein is released.

What next? Luckily, translation "equipment" is very reusable. After the small and large ribosomal subunits separate from the mRNA and from each other, each element can (and usually quickly does) take part in another round of translation.

Epilogue: Processing

Our polypeptide now has all its amino acids—does that mean it's ready to do its job in the cell?

Not necessarily. Polypeptides often need some "edits." During and after translation, amino acids may be chemically altered or removed. The new polypeptide will also fold into a distinct 3D structure, and may join with other polypeptides to make a multi-part protein.

Many proteins are good at folding on their own, but some need helpers ("chaperones") to keep them from sticking together incorrectly during the complex process of folding.

Some proteins also contain special amino acid sequences that direct them to certain parts of the cell. These sequences, often found close to the N- or C-terminus, can be thought of as the protein’s “train ticket” to its final destination. For more about how this works, see the article on protein targeting.

Attribution

This article is a modified derivative of "Ribosomes and protein synthesis," by OpenStax College, Biology, CC BY 4.0. Download the original article for free at http://cnx.org/contents/185cbf87-c72e-48f5-b51e-f14f21b5eabd@10.59.

The modified article is licensed under a CC BY-NC-SA 4.0 license

Works cited

Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). Eukaryotic protein synthesis differs from prokaryotic protein synthesis primarily in translation initiation. In Biochemistry. (5th ed., section 29.5.1). New York, NY: W. H. Freeman. Retrieved from https://www.ncbi.nlm.nih.gov/books/NBK22531/#_A4206_.
Purves, W.K., Sadava, D., Orians, G.H., and Heller, H.C. (2004). From DNA to protein: Genotype to phenotype. In Life: The science of biology (7th ed., pp. 246-247). Sunderland, MA: Sinauer Associates, Inc.
Ophardt, Charles E. (2003). Other antibiotics. In Virtual Chembook. Retrieved October 22, 2016 from http://chemistry.elmhurst.edu/vchembook/654antibiotic.html.
Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). Protein factors play key roles in protein synthesis. In Biochemistry. (5th ed., section 29.4.1). New York, NY: W. H. Freeman. Retrieved from https://www.ncbi.nlm.nih.gov/books/NBK22408/#_A4190_.
Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). Eukaryotic protein synthesis differs from prokaryotic protein synthesis primarily in translation initiation. In Biochemistry. (5th ed., section 29.5). New York, NY: W. H. Freeman. Retrieved from http://www.ncbi.nlm.nih.gov/books/NBK22531/.
Marintchev, A. and Wagner, G. (2004). Translation initiation: Structures, mechanisms, and evolution. In Quarterly Reviews of Biophysics, 37(3/4), 214-215. http://dx.doi.org/10.1017/S0033583505004026. Retrieved from https://gwagner.med.harvard.edu/sites/gwagner.med.harvard.edu/files/marintchev_qrb.pdf.
Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). Protein factors play key roles in protein synthesis. In Biochemistry. (5th ed., section 29.4.2). New York, NY: W. H. Freeman. Retrieved from https://www.ncbi.nlm.nih.gov/books/NBK22408/#_A4192_
Titin. (2016, October 12). Retrieved October 22, 2016 from Wikipedia: https://en.wikipedia.org/wiki/Titin.
Opitz, C. A., Kulke, M., Leake, M. C., Neagoe, C., Hinssen, H., Hajjar, R. J., and Linke, W. A. (2003). Damped elastic recoil of the titin spring in myofibrils of human myocardium. PNAS, 100(22), 12688. http://dx.doi.org/10.1073/pnas.2133733100.

References

Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). A ribosome is a ribonucleoprotein particle (70S) made of a small (30S) and a large (50S) subunit. In Biochemistry. (5th ed., section 29.2). New York, NY: W. H. Freeman. Retrieved from https://www.ncbi.nlm.nih.gov/books/NBK22335/.

Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). Eukaryotic protein synthesis differs from prokaryotic protein synthesis primarily in translation initiation. In Biochemistry. (5th ed., section 29.5). New York, NY: W. H. Freeman. Retrieved from http://www.ncbi.nlm.nih.gov/books/NBK22531/.

Berg, J. M., Tymoczko, J. L., and Stryer, L. (2002). Protein factors play key roles in protein synthesis. In Biochemistry. (5th ed., section 29.4). New York, NY: W. H. Freeman. Retrieved from http://www.ncbi.nlm.nih.gov/books/NBK22408/.

Cooper, G. M. (2000). Translation of mRNA. In The cell: A molecular approach. (2nd ed.). Retrieved from http://www.ncbi.nlm.nih.gov/books/NBK9849/.

Erythromycin. (2010, September 1). In MedlinePlus. Retrieved from https://www.nlm.nih.gov/medlineplus/druginfo/meds/a682381.html.

Erythromycin. (2015, December 27). Retrieved December 31, 2015 from Wikipedia: https://en.wikipedia.org/wiki/Erythromycin.

Eukaryotes use a complex of many initiation factors. (2007). In Protein synthesis. Retrieved from http://bioscience.jbpub.com/cells/MBIO269.aspx.

Initiation involves base pairing between mRNA and rRNA. (2007). In Protein synthesis. Retrieved from http://bioscience.jbpub.com/cells/MBIO267.aspx.

Initiator tRNA. (n.d). A special initiator tRNA starts the polypeptide chain. Retrieved December 31, 2015 from http://molecularstudy.blogspot.com/2012/10/a-special-initiator-trna-starts.html.

Laursen, B. S., Sørensen, H. P., Mortensen, K. K., and Sperling-Petersen, H. U. (2005). Initiation of protein synthesis in bacteria. Microbiol. Mol. Biol. Rev., 69(1), 101-123. http://dx.doi.org/10.1128/MMBR.69.1.101-123.2005.

Marintchev, A. and Wagner, G. (2004). Translation initiation: Structures, mechanisms, and evolution. In Quarterly Reviews of Biophysics, 37(3/4), 197-284. http://dx.doi.org/10.1017/S0033583505004026. Retrieved from https://gwagner.med.harvard.edu/sites/gwagner.med.harvard.edu/files/marintchev_qrb.pdf.

Nakagawa, S., Niimura, Y., Miura, K., and Gojobori, T. (2010). Dynamic evolution of translation initiation mechanisms in prokaryotes. PNAS, 107(14), 6382-6387. http://dx.doi.org/10.1073/pnas.1002036107.

Neyfakh, A. and Mankin, A. (2000, January 30). Fundamentals of drug action I: lecture 3. Retrieved from http://www.uic.edu/classes/phar/phar331/.

N-Formylmethionine. (2015, December 13). Retrieved December 21, 2015 from Wikipedia: https://en.wikipedia.org/wiki/N-Formylmethionine.

OpenStax College, Biology. (2015, September 30). Ribosomes and protein synthesis. In OpenStax CNX. Retrieved from https://cnx.org/contents/s8Hh0oOc@8.57:FUH9XUkW@6/Translation.

OpenStax College, Biology. (n.d.). Translation. In OpenStax CNX. Retrieved from http://philschatz.com/biology-concepts-book/contents/m45479.html.

Ophardt, Charles E. (2003). Other antibiotics. In Virtual Chembook. Retrieved October 22, 2016 from http://chemistry.elmhurst.edu/vchembook/654antibiotic.html.

Opitz, C. A., Kulke, M., Leake, M. C., Neagoe, C., Hinssen, H., Hajjar, R. J., and Linke, W. A. (2003). Damped elastic recoil of the titin spring in myofibrils of human myocardium. PNAS, 100(22), 12688-12693. http://dx.doi.org/10.1073/pnas.2133733100.

Purves, W.K., Sadava, D., Orians, G.H., and Heller, H.C. (2004). From DNA to protein: Genotype to phenotype. In Life: The science of biology (7th ed., pp. 233-256). Sunderland, MA: Sinauer Associates, Inc.

Rasmussen, L. C. V., Laursen, B. S., Mortensen, K. K., and Sperling-Petersen, H. U. (2009). Initiator tRNAs in bacteria and eukaryotes. eLS. http://dx.doi.org/10.1002/9780470015902.a0000543.pub2.

Reece, J. B., Urry, L. A., Cain, M. L., Wasserman, S. A., Minorsky, P. V., and Jackson, R. B. (2011). Translation is the RNA-directed synthesis of a polypeptide: A closer look. In Campbell biology (10th ed., pp. 345-353). San Francisco, CA: Pearson.

Small subunits scan for initiation sites on eukaryotic mRNA. (2007). In Protein synthesis. Retrieved from http://bioscience.jbpub.com/cells/MBIO268.aspx.

Titin. (2016, October 12). Retrieved October 22, 2016 from Wikipedia: https://en.wikipedia.org/wiki/Titin.

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arvintvk
Posted 7 years ago. Direct link to arvintvk's post “The part about mRNA shift...”
The part about mRNA shifting one codon, isn't it the ribosome that shifts one codon?
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(13 votes)
Answer
- Emily
  Posted 7 years ago. Direct link to Emily's post “No. The ribosome is the w...”
  No. The ribosome is the workbench and the mRNA is being moved through the ribosome shifting downwards every codon.
  Comment on Emily's post “No. The ribosome is the w...”
  (13 votes)
Zoyamehdi99
Posted 6 years ago. Direct link to Zoyamehdi99's post “What about Initiation fac...”
What about Initiation factors? IF1, IF2 & IF3. Please could you explain their roles? Thanks
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(6 votes)
Answer
- a00821850
  Posted 6 years ago. Direct link to a00821850's post “IF1, Binds to the 30S sub...”
  IF1, Binds to the 30S subunit to the A site, prevents tRNA binding
  IF2, Binds initiator tRNA (f-Met) and controls its entry to the ribosome at the P site
  IF3, Required for the 30S to bind mRNA
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  (6 votes)
Camila
Posted 5 years ago. Direct link to Camila's post “what about untranslated r...”
what about untranslated regions? such as the 5' and 3' UTR
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(4 votes)
Answer
- tyersome
  Posted 5 years ago. Direct link to tyersome's post “They don't get translated...”
  They don't get translated!
  
  The 5' UTR is everything 5' of the start codon.
  
  The interesting question is how does the ribosome know which start codon to start with?
  
  The short answer to that is that the sequence of the mRNA around a potential start codon influences whether or not it will be used§. These sequences are bound by proteins that help guide the ribosome to assemble at the correct place to start translation.
  (In fact, codons other than AUG are sometimes used as start codons!)
  
  This is covered in a bit more detail in another article:
  https://www.khanacademy.org/science/biology/gene-expression-central-dogma/translation-polypeptides/a/the-stages-of-translation
  
  I also encourage you to look at some of the references for that section, which will help give you more detail on this high complex process that is still being actively studied.
  
  The 3' UTR is simpler to identify — it is typically† everything after the first in frame stop codon and before the polyadenylation signal (where the polyA tail gets added.
  
  Does that help?
  
  ————————————————————————————————————
  
  §Note: The mechanisms are very different in prokaryotic and eukaryotic organisms — they can also vary between different species and even for different genes!
  
  †Note: As is often true in biology there are numerous caveats and exceptions. A common example is found in eukaryotic genes — these genes often have introns, some of which are only spliced in some circumstances, so the in frame stop may be in different places for different transcripts from the same gene. This is knowns as alternative splicing.
  Comment on tyersome's post “They don't get translated...”
  (8 votes)
Arkadeep Sarkar
Posted 6 years ago. Direct link to Arkadeep Sarkar's post “what is the total atp or ...”
what is the total atp or gtp utilised?
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(4 votes)
Answer
- Mariah Katsiris
  Posted 6 years ago. Direct link to Mariah Katsiris's post “It costs 4n high-energy b...”
  It costs 4n high-energy bonds to make a peptide chain. n= the number of amino acids in the chain.
  
  For example:
  
  How many high-energy phosphate bonds are required to make a 50 amino acid polypeptide chain?
  
  Solution: 200.
  -2 phosphate bonds hydrolyzed per amino acid to make the amino-acyl tRNAs (or 100 for the 50 AAs)
  -2 phosphate bonds required for each elongation step (49 steps in a chain of 50, so 98 for the chain)
  -1 GTP for initiation to position the first tRNA and mRNA on the ribosome
  -1 GTP for termination
  
  For a total of 200.
  Comment on Mariah Katsiris's post “It costs 4n high-energy b...”
  (3 votes)
EmperorPenguin
Posted 6 years ago. Direct link to EmperorPenguin's post “During translation, is th...”
During translation, is the tRNA used up or can it be recycled?
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(3 votes)
Answer
- JaniceHolz
  Posted 6 years ago. Direct link to JaniceHolz's post “Great question! The tRNA ...”
  Great question!
  The tRNA is released into the cell and can again be joined with an amino acid. (Details on the joining are in the previous section.)
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  (5 votes)
Shannon
Posted 7 years ago. Direct link to Shannon's post “What happens to mRNA afte...”
What happens to mRNA after the polypeptide chain is formed?
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(4 votes)
Answer
- Weather
  Posted 6 years ago. Direct link to Weather's post “It's released and might b...”
  It's released and might be used again. I believe after being used enough, they can break down.
  Comment on Weather's post “It's released and might b...”
  (1 vote)
lucija.falamic00
Posted 5 years ago. Direct link to lucija.falamic00's post “In eukaryotic mRNA, is th...”
In eukaryotic mRNA, is the start codon always at the start of the first exon?
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(2 votes)
Answer
- Ivana - Science trainee
  Posted 5 years ago. Direct link to Ivana - Science trainee's post “Yes, it is. It cannot b...”
  Yes, it is.
  
  It cannot be considered start codon if it is not AUG at the beginning of first exon.
  
  What might confuse is that it does not have to be on the very strict beginning, there might be nucleotides before, but that is 5' untranslated region.
  
  The first AUG is usually considered as a start codon, but probably GGC could take place in front of that AUG and be not translated by the ribosome.
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  (4 votes)
Julie Takacs
Posted 4 years ago. Direct link to Julie Takacs's post “Don't release factors bin...”
Don't release factors bind in the A site (not the P site)?
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(3 votes)
Answer
- Olipriya Chakraborty
  Posted 3 years ago. Direct link to Olipriya Chakraborty's post “A release factor (RF) ref...”
  A release factor (RF) refers to a type of translation factor that triggers translation termination. Release factors fall into two classes; Class I release factors that bind the ribosome in response to the presence of a stop codon within the ribosomal A-site. Thus it binds with A site (not P site).
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  (2 votes)
Thermos
Posted 5 years ago. Direct link to Thermos's post “Why do polypeptides alway...”
Why do polypeptides always start with methionine?
Thanks!
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(3 votes)
Answer
- tyersome
  Posted 5 years ago. Direct link to tyersome's post “They don't. Polypeptides...”
  They don't.
  
  Polypeptides frequently start with a methionine for reasons that are discussed in this article ...
  
  However, the beginnings of many polypeptides are removed (this is a class of post-translational modification), so even if they did start with methionine the mature protein may not.
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Geode
Posted 3 years ago. Direct link to Geode's post “Where does used mRNA "go"...”
Where does used mRNA "go" once it's been translated? Does it travel back to the nucleus or just stay where it was?
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(2 votes)
Answer
- FrozenPhoenix45
  Posted 3 years ago. Direct link to FrozenPhoenix45's post “There are two things that...”
  There are two things that could happen to it. It could go back to the nucleus to be reused, or, if it is detected to have outlived its usefulness, be destroyed. There are several proteins that "watch" the mRNA to make sure it is still reliable, and if it isn't it is degraded. Otherwise, yes, it gets reused.
  
  Anyway, I hope this helped!
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  (2 votes)